Abstract
Traditional kernel methods for estimating the spatially-varying density of points in a spatial point pattern may exhibit unrealistic artefacts, in addition to the familiar problems of bias and over- or under-smoothing. Performance can be improved by using diffusion smoothing, in which the smoothing kernel is the heat kernel on the spatial domain. This paper develops diffusion smoothing into a practical statistical methodology for two-dimensional spatial point pattern data. We clarify the advantages and disadvantages of diffusion smoothing over Gaussian kernel smoothing. Adaptive smoothing, where the smoothing bandwidth is spatially-varying, can be performed by adopting a spatially-varying diffusion rate: this avoids technical problems with adaptive Gaussian smoothing and has substantially better performance. We introduce a new form of adaptive smoothing using lagged arrival times, which has good performance and improved robustness. Applications in archaeology and epidemiology are demonstrated. The methods are implemented in open-source code.
Funding Statement
Funding was received from the Australian Research Council discovery grants DP130104470 (Baddeley) and DP130102322 (Baddeley, Rakshit, Nair); the Grains Research and Development Corporation and the University of Western Australia (Rakshit); and Royal Society of New Zealand Marsden Fund grants 15-UOO-192 and 19-UOO-191 (Davies).
Acknowledgements
Data analysis was performed in the R language using the contributed packages spatstat [4, 3] and sparr [29]. Software implementations of the algorithms described here are now included in spatstat. The simulations also used the packages spagmix [55] and doParallel [53]. Code scripts to perform all the calculations in this paper are available Supplementary Material.
Citation
Adrian Baddeley. Tilman M. Davies. Suman Rakshit. Gopalan Nair. Greg McSwiggan. "Diffusion Smoothing for Spatial Point Patterns." Statist. Sci. 37 (1) 123 - 142, February 2022. https://doi.org/10.1214/21-STS825
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